PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012323m
Common NameCICLE_v10012016mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 301aa    MW: 34997 Da    PI: 9.2766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012323mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-062953123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     ++C+  dC+ s++rk++L+rH+ +H
  Ciclev10012323m 29 FRCSvdDCHASYRRKDHLTRHLLRH 53
                     89*********************99 PP

2zf-C2H215.64.8e-055883123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                     +kCp  +C++ F+ + n+krH +  H
  Ciclev10012323m 58 FKCPieNCNREFTIQGNMKRHVKElH 83
                     89********************9986 PP

3zf-C2H218.55.5e-0698122123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+   Cgk+F+  s L++H  +H
  Ciclev10012323m  98 YICQeiGCGKVFKYASKLRQHEDSH 122
                      89*******************9888 PP

4zf-C2H215.74.2e-05189213223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs++snL++H +  H
  Ciclev10012323m 189 KCQfkGCLLSFSTNSNLRQHVKAvH 213
                      688889**************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-92555IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.75E-62655No hitNo description
PROSITE profilePS501579.8272958IPR007087Zinc finger, C2H2
SMARTSM003550.00662953IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-65680IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.98E-65684No hitNo description
PROSITE profilePS5015710.6375889IPR007087Zinc finger, C2H2
SMARTSM003550.00155883IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806084IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-890122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-594122No hitNo description
PROSITE profilePS5015711.2498127IPR007087Zinc finger, C2H2
SMARTSM003550.003398122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SMARTSM003553.6130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
SMARTSM0035520158179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-6169210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.58E-8170226No hitNo description
PROSITE profilePS5015710.928188218IPR007087Zinc finger, C2H2
SMARTSM003550.011188213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190213IPR007087Zinc finger, C2H2
SMARTSM003558.6219244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDQYQVGRPP EKLHQVSLIH AIFRIERPFR CSVDDCHASY RRKDHLTRHL LRHQGKLFKC  60
PIENCNREFT IQGNMKRHVK ELHHEGTTST DSGDQKQYIC QEIGCGKVFK YASKLRQHED  120
SHVNLDSVEA FCSAPGCMKY FTNKQCLEAH IRSCHQYIPC EICGSMQLKK NIKRHVRTHE  180
ARDLSERIKC QFKGCLLSFS TNSNLRQHVK AVHYEIKPFA CSFFGCGMRF AFKHVRDNHE  240
KSGHHVYSSG DFVESDERFR SRERGGRKRK CPTVEMLIRK RVTLPSPTQT CNTKIDDTPD  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430926.10.0hypothetical protein CICLE_v10012016mg
SwissprotQ84MZ45e-90TF3A_ARATH; Transcription factor IIIA
TrEMBLV4T3S90.0V4T3S9_9R
STRINGPOPTR_0013s11300.11e-134(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-83transcription factor IIIA